Scaffold Ga0114340_1000264

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000264
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37030
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028501	Metagenome / Metatranscriptome	191	Y
F045069	Metagenome	153	N
F049498	Metagenome / Metatranscriptome	146	Y
F095133	Metagenome	105	Y
F097262	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100026410	F045069	AGGAG	MKYLLLLLLAAPVAAEPGYLTYTNDISVQTVLTQDRVDACRGRFLMFDIDGRQRAYYGCWSSAQGFAHIEMADGSQRIMPLTQFRRSISIAVQPTMEPIR*
Ga0114340_100026413	F097262	N/A	MTCNERTYVVNVIKMAGGLRRQRKCKACGAGAYSAEVWLRATANGAEPVYTKEEAALIKKKAVDARRANEDRRKKNAT*
Ga0114340_100026452	F028501	GAGG	MKTITAKYDGFCAATGARILPGDVIQWERGRSVLLERKAARIDTITLVGEHGPRDYYRNARGRCIDAPCCGCCTI*
Ga0114340_100026454	F095133	GAGG	MMTNTAAAAGTSGRPYPHYLERVDVLLDDTWWSIWVDYEPADASVGLPATAWLVHAHVAEHYADIADYLSESTIKRLETEAADYLSEGR*
Ga0114340_10002649	F049498	AGGAG	MAKLPYTITICPDEPNPKQFTAMTPQLVNALRFGYDMTINQNQYIWPAGSRGATQINTHKEKDDKATGEQQ*