Scaffold Ga0114340_1000246

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000246
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38011
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (72.88%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001991	Metagenome / Metatranscriptome	607	Y
F002997	Metagenome / Metatranscriptome	514	Y
F006660	Metagenome	367	Y
F014737	Metagenome / Metatranscriptome	260	Y
F043944	Metagenome	155	Y
F053889	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100024615	F043944	GGA	LKKQVEVAMIFNGHTHDSLADIDDITMAQIQTMYADGLIGNRGTLEVLGSLTAGVFNYMRQANSRPYKLANILGSAYDYIYPPQSEQDKKAAVNNSLLAFMTQAPDFKQDRFKHG*
Ga0114340_100024617	F006660	GGAG	MSFQTIINIQQRMNVNNRRVVGQQVSRGGYVTTAQYLTAVPWVFTVQPHAFLYYPQVRDVIQSIDNADRQNPQNITFNTDTLSWFTAYQGNLTTGQANALTLSAVPAANSQTISVGNLPSVGSTVIIFKAGDFLQLGSYVYKVTAEVLRGATSTVSVNLHRPVIGTPTVGTLTAVGSAVVFPVVAEVCPTYTLNPMTNGAFVEWTGEFVFREYII*
Ga0114340_100024618	F014737	GGA	MTTINAVTSPSIRHAEFVKLSIGTLGSPTTVYAFCNAGAAITVDGTSYTNLGSLLGVGDVQRDIKATSDDMTVTLTGIDPANVALVLSANIKGSIVEIFRGFLDTNNQIITTPTQQFFKRYQGIISNVSINESFDIKLRTRIATCSISSSSMRRVLDNRLAGVITNQNSWQTFYPNDTSMNRVEVIQSTFFDFGAPVKQQTQTNASAE*
Ga0114340_100024622	F001991	GGA	MALFSKNTLTQVSGFDNQIISGELVYNQKTFWNLALATDGIPIDLTGVTIDAQIIRRQISNLIDTRYGLSFDIADYTVSTPTAVNLTISNRVNASGLFTLVIDESTWSVISTDPQLDINATDPVAFSGRIKLSFPVAGTNPAQDQIIFLLFLVRSDGVVN*
Ga0114340_100024652	F053889	N/A	MKPWNGQGIYLDHLVNHYALMAMNKGTIDHARYMTRQLEKEWDGLGILIAKRIKELQNGD
Ga0114340_10002468	F002997	N/A	MAIARFENITVNSLTFGKSTFGEQSTTQTLWFQTRARVHSVANNVKISEKYRVYSDIVDFTLNYTPNTKTIIDNQNLYSINWRGFDWRIDNVREADDRMTVRILCVRNDPVVAV*