Scaffold Ga0114340_1000245

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000245
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44577
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (43.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F017641	Metagenome / Metatranscriptome	239	Y
F020144	Metagenome / Metatranscriptome	225	Y
F031454	Metagenome / Metatranscriptome	182	Y
F054801	Metagenome	139	N
F085684	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100024510	F020144	N/A	MPFYTNLSGTDVLRSKIDVFTLHDEAENQTYRVELTVDNSGVFITSCSGGAREDMSIGHKDVAIAVARAILEAYQGV*
Ga0114340_100024511	F004208	GGAG	MTYKLNPEAKAFSYTREELFDCITKIVAHPHTAITKHDQSRALAIMVVFDDYFTNYTESEGNGHCVYEQDATDFTDFVRFKLGIDDYDAVDVDEVLK*
Ga0114340_100024519	F085684	GAGG	MSRVYSYPEIEQAYKILKQVVERENSLHEMDMTIMGQHLEDIEYEILPILEQIVYFDPTP
Ga0114340_100024530	F031454	N/A	MKDKFMTDSTLDLFCDHADAQMADEYAMELESKAAELEITVDYYIAEFL*
Ga0114340_100024534	F017641	N/A	MKNQNTSEVFHYVNNWKEGKVNQMFIQQVTPEWQECDHKYVAIALNPVTNKSMVMSKPRSHYDTLMWVRKFCGSFSVLY*
Ga0114340_10002459	F054801	N/A	MTYKVRYTGFGPYKDKFEPNQIFTVKEMLPYAWHENFTFEEVEGEYHTIFFEDVKDT*