Scaffold Ga0114340

Basic Information
Taxon OID	3300008107 Open in IMG/M
Scaffold ID	Ga0114340_1000209 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49194
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (29.23%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

49194

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (29.23%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F031849	Metagenome	181	Y
F038243	Metagenome	166	Y
F081501	Metagenome	114	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10002094	F031849	N/A	MADVLKPLPAIVTDTYANKAPRISDQSKPRTLNLDVVDPSPTSNGDTVDPKTLQVRRTFKDAAQAHSAYRRLKQQNVERNRKNQLIQKKLNNEPPYSAKKLESMGQNWRSNRPTGFLSTMVSRIQPPFKQVIEQAPTLTYTKFPVEGVDSENKTKVFREEITKCIRGWKGHDDIVAQVVHENTTFGFCALCWDDLRDWKPEFLRQDYTFFSIETPQETEATPIWARKRRYQIAELLPVLEDPQMSAMAGWHIKNLVKAINNAIPAGRTLDADDDARRYEDWIREGSYGASYENDAKYVELGELLVREPNGKISRFLFDDKSGDEICTQIDRYSKMSECLALFSVEIGSGALMSSRGAGRDLYNTHIAVEKARNLVVDNSYLSGMLLLKKGPNAKAGATPLTVHHPVAYIAEGYDVIPQNMPANVQDFLNLDRFISGLAEIQIGTFLPSSALGVRDQKVTASEINRVAAIENQIREGILMRFTKQYSKAVERMQRGICHPEHIKAAAELKTKLDIARQMVPNAVWARADVVDAFDRSVMELPSFMVPFQVPDHLDEEAISCVLNMLERNLPPSDILLMAYSPAEELLPDTQAQNDQILDMMIQRYMGNPNVNQDELLKLDWSRKLGESIANSVILPKDQVESLAIEATRQQIIELQSIIAGQEVPVSPRDNDMVHLSVMAQKLMPLIENAPAGSLPPEMVQPLNKALEHFMGHIMQAQAKGADNKQLAEFRSAAEQAFSHLTAGYGVPPPPDLMDKTFAQ*
Ga0114340_100020950	F038243	AGGA	MKTRIDYRLIPKDSFEFGNLQDFAESFDHKIVEHPNVNVYAHYRNGELFGYSDHVFLPTVYPAFHPAYTRPQDVIQVMSDWRAHAQLSGGLGYIGVPLIDDRPKFTNEVMNKLGLTKMNREIYSYDSLT*
Ga0114340_100020965	F081501	N/A	MNSDSGFSHGTGYAGTIYSVLAVAVSMLPELDIWFRILASLSAIAAAWVSIYIMLAKFKKDKSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114340_1000209

Overview

Ecosystem & Geography

Associated Families

Sequences