Scaffold Ga0114340_1000202

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000202
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44042
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (71.19%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001106	Metagenome / Metatranscriptome	776	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003379	Metagenome / Metatranscriptome	490	Y
F003643	Metagenome / Metatranscriptome	475	N
F006841	Metagenome / Metatranscriptome	363	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F051930	Metagenome / Metatranscriptome	143	Y
F099281	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100020213	F003379	AGGA	MKKLSALVMLIATAILSGVALSKFLNWAGQIEIFDFDLDEDIDNEEF*
Ga0114340_10002022	F000447	GAGG	MGYIEIFRMDQNGAGWVDLSEATPDEMFNIELGLLNEGALFTSPEAE*
Ga0114340_100020221	F002489	GAGG	MQEDQNNNNDSTNLEDNLPMVSYIMLHRIYDLLTLIASKVAGSEDTSKMVEYHQAGYLLGPMPSYNPGEQNE*
Ga0114340_100020222	F051930	N/A	MSKEGLVEKFLCPVDQSLLFSNQDIEENIFLYCLSCKYKKNIGFNTYKDIVKLVEGQLKNGRLSK*
Ga0114340_100020225	F003643	AGGAGG	MKQDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTSPRDLLMGGFAATAPVILKALNPNEKSFGFTTK*
Ga0114340_100020234	F099281	GGA	MATVDKNFKVKNGLNVAGAATFDAAVNVDNLVLNSTPLAFDSSTGRLKLQIDGVWKEIALLQDAAEDLTAITFMDIGLAIDYNGQPVYTVFANGVNTTATKFADGGAYSTDTYSMTFDSGAIA*
Ga0114340_100020253	F001106	AGGAG	MSFDTLKVSDLKVIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYQSTVEAVEKDTEEIEILPKFDPKSQPENTILVRMTRDNMRYDIHGKTFTKNHPFVAMSEEDAQKIFDKEEGFRLATPKEVQDFYN*
Ga0114340_100020256	F012456	AGG	MAGSVPGIIKDSTVAQISAFLYYEAAVMSKLTTHSAFKNLFKTTIFNQIEKDFGLYIDSQARVKPRSLHHVYEWNKAGSPTSRLFTLSRIDTEGLSFRINYDFKISKSSVPSKNKKQKKGYVFANKASVMESGMPVIIRPRSAERLVFEIDGATVFMPKGTSVVVKRPGGTQATNQFSLSYGRFFGGQLVNNSIKSSGLQQIFGSRIKKAMGVPMNIKKVQYSFSAGKIRTQADAALHASFGGSL*
Ga0114340_100020257	F009961	GGAGG	MTVDYKIDAMFELRKFLWNELKEAKIFEASDYYSDSSDTEIIPIIPVQQSPEIDQFLNGKKHIVYDKIGMSFEDIWLIACEKVLFTIYSTDITEVYEIRNLIMDLFRRMDESARDANLSRSTGKIIFHSIHVVETSPIEPSMELQGYMSADIILEVKYSRTVGQDGRFD*
Ga0114340_100020259	F006841	AGGAGG	MATTVYDVEEIQLQNGATVKLKPLTIKELRKFMKVIARTQEVTTEDETLSILIEACAVALEKQLPELVKDIDAFEDTLDVPTINRILEICGGIKMDDPNQLAAAVLAGQN*