Scaffold Ga0114340_1000166

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000166
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64867
• Total Scaffold Genes: 133
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (18.80%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014132	Metagenome / Metatranscriptome	265	Y
F035224	Metagenome / Metatranscriptome	172	Y
F056375	Metagenome	137	Y
F070098	Metagenome / Metatranscriptome	123	Y
F093532	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_1000166114	F014132	N/A	MEIDKDELFKLYMEWVDKVSEDNDWKTSFGPKEIVHSITNIIENNPQLIKNRSNT*
Ga0114340_1000166120	F093532	N/A	MATNDEMFRKCMEIEAMVTTMVMRGITDNRRLVEAVDVRYHPNTEWEQEMFSEAIIYAKHAVLN*
Ga0114340_1000166126	F070098	N/A	MEIKDILSELITVATNVLNEKGHPENFDLEDFIDTLETYYSDLDEIGEFYFEGEGEDDFGWDEDEY*
Ga0114340_100016616	F056375	N/A	MNKRTKKAQRKQIIEQNPPLYLSEGHWEEAMLENNSYYDIDLLHKHNKPIYKRIENWEKKYDEASSWLGKWYCQIRIDKERAKIKHYESKS*
Ga0114340_100016691	F035224	AGGA	MLKDRNPDLIMKMVKCVLSAYKRDKDQIDIFDITFKSMDQLTFSIEKVQYKELLGNCMNDLIAMEEYELCAEIKKILEGKKRGRKPKLEVL*