Scaffold Ga0114340_1000149

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000149
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50095
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (71.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F007524	Metagenome / Metatranscriptome	349	Y
F032651	Metagenome / Metatranscriptome	179	Y
F036696	Metagenome	169	Y
F099274	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100014935	F099274	AGGAG	MAKVDGQVVKVGDWVSFKCDIEQSGRITRIDGDRLFLEAGPNGFEGGYIGGQEMTVQSARDCWLEG*
Ga0114340_100014936	F032651	N/A	VYTYTKAIGAKMKKVKVINIEAAGYYTSEYASGSTVKVTLQRGKEIASCDEILIWEEEYAEDCFDEWMDCALAGEAGYTYTEGV*
Ga0114340_100014937	F007524	GGAGG	MSNIKTHVVAINRLMLPLIATVGQFSKDEDDLSMFKMHAGDVAHNISALEEFNETFDVEQLHASIIYQDTLPREHFYAVLKYIEDNALIPERKYACI*
Ga0114340_100014938	F036696	AGGA	MSKELNKRIADAFDKIYSKGDAGLDYMDGHVELDADLMQYFYDDAVETLSKADKTRLADMLELVAADMEIDLEVL*
Ga0114340_100014949	F000652	AGGAG	MKVQVTTIINQWLEVPEGWDRMDVFDFLAEHQSFRTAFQGVSNEDQTARIIDLHVVEEEVTEMGEVAYDD*