Scaffold Ga0114340_1000081

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000081
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78520
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (53.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004169	Metagenome / Metatranscriptome	450	Y
F008358	Metagenome / Metatranscriptome	334	Y
F013889	Metagenome / Metatranscriptome	267	Y
F024768	Metagenome / Metatranscriptome	204	Y
F077003	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100008167	F004169	N/A	MSEDDLKSVIAKYQQKSFELFNQNIVLETQVEKLNITVSALSAELEKLKKPKRGTKTEGEFE*
Ga0114340_100008187	F077003	AGGAG	MVVLLSTAIISCQQALGIIHRLTKVVGLTETQKSEIVAEVRKTIPFCPVVIKKDAK*
Ga0114340_100008189	F008358	N/A	MNPYYIWFVIFFCIGYLIVTDSSIARLFILLTKLAEVEYRKFKWWMVHNPMNPIVKYLMWRRSLQLAKELQEELAKKQENI*
Ga0114340_100008190	F013889	GAGG	MSRTYRKTEGMHSGALRFPHTFSEIKKLDGLLHEEDLEGLPFSGLNHIKAREHNLPTSWDDKVVSAYYQEDYKAS*
Ga0114340_100008197	F024768	N/A	MDYETEIIDGHKAVVRHFFKPHEIQVGSRWARADGSKGYVTVEGFNSFGETDPWYEVVYSWEENGVKKIWQKEN