Scaffold Ga0114340_1000078

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000078
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 126929
• Total Scaffold Genes: 208
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 106 (50.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055721	Metagenome / Metatranscriptome	138	Y
F085375	Metagenome / Metatranscriptome	111	Y
F099203	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_1000078117	F055721	N/A	LGGEEVNKEEYYKHIEENDTYPEHSHKWIVRTYTGELFYRNFGTFETKEETKEFIENYKVKYTTKGFITRYSIQGVCEVL*
Ga0114340_1000078165	F099203	N/A	MLRQTNAMRYITITFGPRNDDPSQFYNERTWWDRQSQAEKWGLQSLSIAGCFGYVVIEEGEDSWKIVDELGAPSNAVSVSAEYKGGVTYSVQPAPKLVLV*
Ga0114340_100007835	F085375	N/A	MINHITPNWDIKDFYDLNYELSTHKDEELVNQYLSSGHNKEKLSIYKYQLPNPMPKCVDEYIIPHFDFLDKVAAAVNYFKPGQYLPLHTDLFGKYVEINNIGSENVIRCMVMLEDNSPGQILQIKDTAYSTWKAGDCFYWDYHEIHAFYNFSMKDRYAIQITGVKNEKSK*