Scaffold Ga0114340_1000065

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000065
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105622
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (73.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007028	Metagenome / Metatranscriptome	359	Y
F007312	Metagenome / Metatranscriptome	353	Y
F026542	Metagenome / Metatranscriptome	197	Y
F078617	Metagenome / Metatranscriptome	116	N
F099180	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100006535	F099180	N/A	MIEPEKLYELKKKHGSIFSVDLKNQQVIFRELTFDEYDKILEYKNSEETSSLDAEDLIINSAVVYPDDFSVDKVQPGLIASLAQEIMDFSGFYSAGLAKSILESKREKANEVRSLMKAFVLATINTYSPEDLDEMTFSQLAELVALSEKIIEIKQNINGIESTNITLQLIDPEEELAKQKQSAARHNLSKKVGEADYQDPIAQKLWGMQ*
Ga0114340_100006557	F007312	AGGAG	MATFYVGPRPVLKGRSTADMINVFKGTAGTYSFYPLFAKGLLDGAPDSHHVPGTGRHPGSVLLSQLFTGSTLYAGTTPLAGTFADGVGYEGARYKPFEFKGLVGAAAFPSGFGHADRVSDYSYNNYIFDGVTSSNIFTGTGHGPRTEAQGAPSSFGVFRPNEVHGVASATVFTSGYGQANTASDYGRNKVLEYKGLASTKAL*
Ga0114340_100006569	F078617	AGGAG	MQTRVFLSGAIEDVQSDFKYSWRDEATSLLDNRGFKAVNPLDYALEEENCEPKEIVDKNLFLQKSCDIILVEYRLLYRAYIGTDFEMTWAHLNNQPIIVWAHQDLQHRIYLKFLATKLADTLEEAVEYICNTYPSNK*
Ga0114340_100006581	F004789	GGAG	MTLPGSYQNPSTKPCWVYCSSCSRCQDKGRYTKCNGCSGRYDPAGKIDVHNEDFCDCRNGILRWRTQEGKLLMTRFKTNPFKGTVKYEKKSEDERDWDSYVADMQEKMDDPNFNPITIYED*
Ga0114340_100006589	F026542	AGGA	MNLQNIEKLQQLLSDFLNPQIQEVINSYVEKGKDNLYFIEIPEVDVVDLGLDKLASLVARTSNVYGRAARFAGMARANYKLIEGKYKKVYKSSRVGKNEAEREAAAMEAAEAEYSALVTCEAIVNLAESLESSARIASESARKLMDKVQSMQIASSRESKGYYLEEDFKTY*
Ga0114340_100006593	F007028	GGA	MPKISKSAFEQSTDSPLDSMINANPGISITTSPVLVCGVNRKINIGNFENIDVYAGISLPLADVSLEDKEALQAAIESAAAYGFSIVSKETGDRYILIKESQQGK*