Scaffold Ga0114340_1000042

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000042
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118287
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (62.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007028	Metagenome / Metatranscriptome	359	Y
F007312	Metagenome / Metatranscriptome	353	Y
F012571	Metagenome	279	Y
F069735	Metagenome	123	N
F090401	Metagenome / Metatranscriptome	108	Y
F095373	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100004242	F007312	AGGAG	MATFYVGPRPVLKGQNTAQMVNPYTTMTGKAKGAGTYSYYPLYSTSHVLDGAPDNDHTPGTGYHPGNVLLSQIFNGTSLYIHPLAGTFPDGTATYDGARFRPMEYKGLAGAAAFPSGFGHADRTSDYSYNNYIFDGVSSANVFANTGHAPRTDAQGAPASFGSFRPDEYNGLASAKVFTDGYGQANVTGDYGREKVQEWYGVPSAKAL*
Ga0114340_100004249	F095373	AGGA	VAASKVNYIVIYAGHSQVYGCSSKKIALESAPPEGCSLSDKKVLFITFEPDTNQLSVYKVDDDEVINADIKLKKEKKTENE*
Ga0114340_100004266	F012571	AGGTGG	MIEDPDDVIGVCSECHSDQPEEYMYRSPFAQNGTNVPCKYCGGVVVITYRESRDEALNQSDRNRGVN*
Ga0114340_100004277	F069735	GGA	MNLQSIEKLNELLSEFLSPQITEILNAYGSGSSAEQYFVNIPESDAVDMTLADLASLVARTSNVYGRVTRFAGMARAYYKICEGRYKKVYKSNRTGKNEAEREANALEAAEEQYTAMITAESVVQLAESMEGAARIASESARKLLDKVQSMQIASYREEKGSYSDSDFSTY*
Ga0114340_100004281	F007028	N/A	MPKINKSAQEESLGSPIEQVVNLVSGEISVSSSPVFICGVNRKVNIGNFENIDIYAGITIPLAGVDPADKDAFNDAVKEAAAYGFSLVSKETGERYMLIKEGQQGK*
Ga0114340_100004295	F090401	N/A	VDYYINYNYNKKEKQMPRKYTGNTDGNGGKAKPGTTKLVEFMQKRWGFTNLGIYANRSMNNPKATPGDPKWLSVHATGRACDVGYANRKAALQAWDWLLANTAALGIEEIHDYAFDKDGKEGPAKAWGRGYRCSRGEGAKGVKVYDAKDNAGSMGGKWLHIELSPEMANDAAKFEAAWKAIPKPDPIIK*