Scaffold Ga0114339

Basic Information
Taxon OID	3300008106 Open in IMG/M
Scaffold ID	Ga0114339_1027952 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3266
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3266

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)	Depth (m)	4.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7635

Long. (^o)

-83.3309

Alt. (m)

Depth (m)

4.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016494	Metagenome / Metatranscriptome	246	N
F023520	Metagenome / Metatranscriptome	209	N
F024962	Metagenome / Metatranscriptome	203	N
F028416	Metagenome / Metatranscriptome	191	N
F031075	Metagenome / Metatranscriptome	183	N
F085117	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114339_10279521	F016494	N/A	SVMENKPNFNNRIYQFNFISFCQKMSQKDNDSEEVAIDNFTELSQLVKSTLQTVDELFPHKPEFSFEDVMVQFYTLKSKIEKIDPSWKFENTDTSYVFEILKLLDAVNIEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNIQPS*
Ga0114339_10279522	F031075	N/A	MSQEKSTSVSETASRKEDSEDCGHEVNACTCPPDKEYEKYTKIRALTHLIGMINFMPPFDGPISYGPLERIWNFKKQIREIEPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQDELDATSSEELSSEEENGK*
Ga0114339_10279523	F024962	AGGA	MKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDFPQYEKEDFIKEVELHVFEWKSKVQERSVENITGLDHLLSSKIIDTLEIYLEALEETNIDERQRKLYYTDSFAAVWNHRKIEDIIRHPWSIELCRRNNWRAEMPKDN*
Ga0114339_10279524	F023520	N/A	MTTKEGKYVKCCDTKSRDKRIESVDDLLSAINLIFIQNMFEEGDDDIALLHHLYKAKLKALSIKPELTLVNEAHLLVNKILEGVDSIDTNKEWNHQDNKFKFVEIKQAMTDLRLCYPLWKLNRYDIEKYSTCLCPSCDSIDVAGGKTLEKLGELTLEL*
Ga0114339_10279525	F028416	AGAAG	MNEQPMNGHAIVNRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQSNTAADNTLVFGAIYDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLADYELDC*
Ga0114339_10279528	F085117	N/A	MEQKLTTKKVDKSQEIARCRKSISETTVLLREKIRLLTVLFNKLSISERNLIGEELMEVFGNSMRMIHDISQNLEIPVKTSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114339_1027952

Overview

Ecosystem & Geography

Associated Families

Sequences