Scaffold Ga0114339_1000012

Overview

Basic Information

• Taxon OID: 3300008106
• Scaffold ID: Ga0114339_1000012
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107890
• Total Scaffold Genes: 158
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (56.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F009071	Metagenome / Metatranscriptome	323	Y
F012110	Metagenome / Metatranscriptome	283	Y
F027061	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114339_1000012105	F001881	N/A	MNQIWEARNAGADTEEKLIASVLRIAAENIQFYTAQNDLIVLDKNDMLQLAQELEE*
Ga0114339_1000012154	F012110	N/A	MTKALLLLAWVPLLSVASPQPNKTEFPVTISCNAAWELMDIVKNDDVVHQRKEDQLLLELRKDVITRC*
Ga0114339_100001292	F027061	N/A	MIKMTTRALQILESTMELSMRPKSGDRQKLIARVIREAADRLCTDWGELEHPVDVLNKIADEVEAL*
Ga0114339_100001298	F009071	GAG	MGHPEILNGIGETKMPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEDQCRQYAYDNYTDKEQGEMCLMDWEAREWDV*