NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114338_1056501

Scaffold Ga0114338_1056501


Overview

Basic Information
Taxon OID3300008105 Open in IMG/M
Scaffold IDGa0114338_1056501 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1604
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041599Metagenome159Y
F048760Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0114338_10565012F041599AGGMVELRSGTTTGGQNPSTPDVRDPNIPENIEVASQGIQAVDHSAQVQSPIQQQGQTPAAAQGVYVGGTYPATLSRAAQGTPSYRPPHFAFTTSPSRQSQEEFKSTKSHEDSNGSESTKPTPTPRRNFTFEAPMRPLDVARNMYLDYTITQSIKFYNKGVEKLPGEAFNGKLLLTWLIQAQDKANMFTWTSILTIKGKPLT*
Ga0114338_10565013F048760AGGAGLDPFRKENQKEFDFLLQEEYNLVFPTASRISSVRFSTPSEDPFEDLEINDTLQDSRLIPVTQAGEPIRKAFLKKYLEDRLREYLALGGLKELLDRKPLIFANQKLPAPFYWDLWGNLEHLRKAYQEHLAENLFGPSSDKEEEGEDYNSAVSWDTQ*
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