Basic Information | |
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Taxon OID | 3300008105 Open in IMG/M |
Scaffold ID | Ga0114338_1053932 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1661 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010669 | Metagenome / Metatranscriptome | 300 | Y |
F012769 | Metagenome / Metatranscriptome | 277 | N |
F075671 | Metagenome / Metatranscriptome | 118 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114338_10539321 | F075671 | GAG | MMKEICELLNELDAGKEKFFIDRRTKVNGVITLHTPQEEIEKLFVKQLVTLTKLDCKCQFVEQILAAVIRLKENSSFPLQREAVNLARVLLTGDNESVVSKSRVVTDLL |
Ga0114338_10539322 | F010669 | N/A | MELELTRMEQSDDDLTDPSDSEDSNMGISETHWPSDPSEVKCRLHAYIAHEQEILAELLSELESEVQTSSENIIVERIKKCFRCIDDIIEYATQFLKQARLIEMRNFTGFYYEIENDAKQANRQALTILSILRRGNLSRLASSVKELVIELDDIRILVSRKTLEQIEETLEEYGTRRTHTLRQIERLFP* |
Ga0114338_10539323 | F012769 | N/A | PKFKVRELVKDKFDPILKEEYQEEIARKLFNASIEVIRQSVNRITEQYYLPYSLEEKEDVVKEAMVQVSEWKNRILIRRQEVKITRIDRALSKKILDMLAEYLRALEETDIAKRQSKLYHVDAVAAITELQINRKFASPERKPVKRKIH* |
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