Scaffold Ga0114338_1027635

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114338_1027635

Scaffold Ga0114338_1027635

Overview

Basic Information
Taxon OID	3300008105 Open in IMG/M
Scaffold ID	Ga0114338_1027635 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2795
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7635	Long. (^o)	-83.3309	Alt. (m)		Depth (m)	4.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012848	Metagenome	276	Y
F014231	Metagenome	264	Y
F041603	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114338_10276352	F041603	N/A	VSQLTVSNKKPRLGPRVATQAWWIEKIKKDPIYQYTEEWTKHSEYQVARWKILAELDNKVAGTSILRGAPGFGQAYPPKIEVKPFWFKPIIGADFKVFQLWLWLEATKSLGLSISEEADKWYKYTSTEDLKEGAIKLLGIFKEEFAPELDDYQESEYSCVYPTTPLIKSIVLDIPVGPNYKYLNKTIKDISYFPTTESGQVIKKKYFKVYLEECLAEYLALGGLNKLIQRVPLVEAGQNLPDPFYWDLWANLEHLRESYIEFCAQEHFNPEASEEESMTSLDTQV*
Ga0114338_10276353	F014231	AGG	MLLRSGATTGGTAPRTPPRSPSPTTGGGVPDQIEITSPQRQEGNEEVSAPRTPVQLPQVYTAGIYVANFGRSPSEPANFRPAQFSFLPQPDYRTAREQSDPGDPDNNGGQPDMSRPIPNQPVISSPQNQMKPGEALMAFTFEAPMRPLDVARNMYLDYTTTQSIKFYNKGCEKLPGEPFNGKMLMTWLVQVQGKANMFTWTFILTIKGKLLTQHFMELTMMESEGTCSDIPR*
Ga0114338_10276354	F012848	N/A	MDKYTIYRKNTFEPIQDGVCFLKTIIDNYHSNTRSSAKLIRKQLATLNYYMKNVAKGDVTKLCEHTRELLFELNAAGETTNDLLANLIEALREAPDHNFQRWLSNQVDLWSKRKLDWKQDGSDLMDEAELYYLEAINTRRWGRKTYKQDVQYAFGATNSETETEEEKEKPNNNSYEEMIKALTAQLQEQTAAYTARWSGSN

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