NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114255_100040

Scaffold Ga0114255_100040


Overview

Basic Information
Taxon OID3300008098 Open in IMG/M
Scaffold IDGa0114255_100040 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 764224817 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)153998
Total Scaffold Genes137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)124 (90.51%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089057Metagenome109N
F095631Metagenome105N
F099452Metagenome103N
F103435Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0114255_100040118F095631GGAGGMASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDCDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVSNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNVIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLTDRDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDVKVLAVFYTDDKYQVPYRWAEAEFVNYDQNTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTANFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0114255_10004044F099452AGGMDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSVNVFTLYKDIINLDDVSLLTDLRNTEWYKDWFTEDKRNSDLIDLTKFNFRSLERFEKEEYLRDAEHYDFEGVSEVDSYDLFDTLREDEDIELFKLTAENILINHGFFNNTDYNLYEVPDEHMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSIYFTIFDSLNEDTRTRAR*
Ga0114255_10004083F089057GGAGGMTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDTNDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNMDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKDLMNESATMAFQYMSEEDIHDVVDDINSRSVLARYLSRM*
Ga0114255_10004091F103435N/AMKFVFCTEPIYQYYRSYLYADDKDKLDKQLMIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYQYLIDNPDFETIFSEVLFNQSEVEFYEFYKAIFRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYNIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE*

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