Scaffold Ga0100392_1068572

Overview

Basic Information

• Taxon OID: 3300008095
• Scaffold ID: Ga0100392_1068572
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2194
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003235	Metagenome / Metatranscriptome	498	Y
F058693	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100392_10685722	F058693	GGTGG	LLNKPLVLNRIFFTVKVLTDPTTDYKLYISLGDPGFSSYFTLGGQVPYFEAKGEGIFQGDIWAQNVSAAEIYLSMSEILV*
Ga0100392_10685723	F003235	N/A	MEKYKKFIAEYKKDFLLPRNLFAKEKDIFLYLFQLLREKINKGRYPEVYNDEIIYSKSDLKNLILKGIILFKSNKRGWMITINPTYITKNVECSWCGAKFNEKIYFRQKRMRCPSCMGGMNGSTVIEKFEDNREIKEIEILHDKEIKEEINDIEVVRTDIKKIQAHNKIIPFRTSKADSLNAISAVNRIAEKKKEKRVITIQEKILANFSDTCINFIREYFFIYSHTIFSPIKYMNIGLTQIRKDPRFIANASLKNTILSEVKTACDELLTTYYQTNEHTTTINLPQNQT*