Scaffold Ga0114852_100093

Overview

Basic Information

• Taxon OID: 3300008074
• Scaffold ID: Ga0114852_100093
• Source Dataset Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764143897 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30468
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (79.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F051214	Metagenome	144	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114852_10009310	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNASDIIEYQLKNGDSFIVTYDPIQRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0114852_10009324	F081456	N/A	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0114852_1000936	F027205	N/A	MRAVKESEEFERKALAEARKRDRAEGKPPREVLHPDHKPGREIVLDYIKNPERRRAPRCSIHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK*