Scaffold Ga0108970_11519539

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_11519539
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5097
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000714	Metagenome / Metatranscriptome	924	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007468	Metagenome / Metatranscriptome	350	Y
F007470	Metagenome / Metatranscriptome	350	Y
F034924	Metagenome / Metatranscriptome	173	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1151953910	F001460	GAGG	MLGYTEEDLNRMINAVHDVKLFYLRSPSDLMNKDPLVKDLEDTVSFMQGLWAEGYFD*
Ga0108970_1151953913	F000450	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLANLAEAVFKARPRWNDPSYATRITISQMVADDWNSETGWGLHVNEIGDNEHKIAIVDFDQQTFSLHEEAPRNDKDNKVNGMSNEAIFTMDLSNFVEKYADVTISV*
Ga0108970_1151953915	F007470	GGAG	MDYQDGFEDGVKFAREVIVSNIRLWAETSEDGQAYDDIADRLEFGTVDYDL*
Ga0108970_1151953917	F000714	N/A	GNEMETTETTVTTIPDTYNPNLLVTYKVIRGYSDAEYQTDKVTSIEWDLHNARQAQKRVGVFEDKVSRVKDIITEAYEDSDDQETLRAIAEALGIELVREVQFTATLEVSGTYTYNILENDYDLDLDSEVTDALYADSSNGNITIDDTEVCHVREA*
Ga0108970_115195392	F003603	AGGCGG	MKNKEQQIGELLANSVEDHFFNPAALGRYLAEQPTYTIDRVIEVVAWIIEKQARRYEREVETGGTISEGLAIAYKLDEVIDKIKDKNTFKHVKLPITTAERKEIINKLPKVKETNYRYSWLHDTNNTNRVTIDHPFI*
Ga0108970_115195393	F000852	AGGA	MATKREYLKSKGITVGARGRFSAAAKQALQEATSNGVTFEAEKQAPKK*
Ga0108970_115195394	F034924	GAGG	LPIYRVFGTKYKNYYTIVSAADEYEAAEIANSRPSIDWDEVPTDDEIEATDVFLDEDTSIDLQLNM*
Ga0108970_115195395	F001019	AGGAGG	MSSYAPSLEILEVAYDVSPGGVRTFEVYDKGDNYDIMDMPIYETESLTKAVEYCYNLDKDFIVRTYAEWEMRELIADL*
Ga0108970_115195396	F000441	AGGAGG	MSDPYIDEQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMSEQEGQNE*
Ga0108970_115195397	F001781	GGAG	MKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWDNLCEAVEAGHGFSLEDGAEQHQDDVLEWMMNRDYIVDPMWEEEEDEDE*
Ga0108970_115195398	F082666	AGG	MIETAEALPESIQRAVDLGISGIDIMHGERKIMMLVAEQELANAQAIEDETEEAMDSMERKYWEGQLDALVELYRLTYDISFAIGARDEARG*
Ga0108970_115195399	F007468	GGAGG	LTKSSRFLEYMKLHLISLNQDMEKDLNVESKINIQGQIMATEHLLSVATDIMNNSNERYNND*