Scaffold Ga0108970

Basic Information
Taxon OID	3300008055 Open in IMG/M
Scaffold ID	Ga0108970_11293847 Open in IMG/M
Source Dataset Name	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15344
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15344

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (70.59%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Ecosystem

Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location Name	Netarts Bay, Oregon, USA
Coordinates	Lat. (^o)	45.394187	Long. (^o)	-123.939629	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Netarts Bay, Oregon, USA

Coordinates

Lat. (^o)

45.394187

Long. (^o)

-123.939629

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1129384711	F005740	GAG	MKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQETGYGLLNGNQVCVGKQLIDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGAWIDGEKLTLALPYVQSTKKFTELTGVIREATNTVSRLYEYDATTALETDLAVYDPDETLPQYRRSYLADRCNNEEDKPVTVMAKMRHINATSVNDYLIPPCADAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF*
Ga0108970_1129384713	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQSFVSPRPGFVQKDYNLCTTITADNAEITADQTNVTADGWSEDCYGPQSLTGTFQCALPYIGDNGQTFILMLISGKVWLYDCLQNNAQNLTVSPSLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTNLRRATDDEIKCGKMMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSVQAPTDRDTWKNLNYPIQAISLLTSGALGSRSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEILNITDNDQTNLLWASSAVVFDNRLLMTGQPRYRADGVTHQALMVLDFDLITSMRKKFPPAWAGIWTGLNVLQIVKTENAYGDRCFSIARGSDGSIQIWEITKSNKFDSNLSDPKKEIRWLVQTRAYNFELPFGLKRLDSGDIFIDSLEGNVSFNVEYRPDQYPGWLEWADWSECAIVDQCVTGLCPLTNFQPQYRPKMRLPTPADIPCNSTISTPTRNLYEVQMSLTITGYCRIKSIRVHAYDVQESAVGECRTFQGCKVLEACDINPLFYTSE*
Ga0108970_1129384716	F004664	N/A	MSKVTGYKVLNEHMVIPGGWHYRVPETGIEIMGGSWPQLHEFVRNHYTANAIAVPSNLDTLITEYACRNGADCAYNEVELPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVDQAEANRRASICSGCRFNRKPLGCTGCNARVLKEAVKTFSQHGNTPYDEQVQSCEFCGCFIRSMVWFPIETLHKFTDATENENLPAHCWKKRPCTET*
Ga0108970_112938479	F007361	N/A	MKGKLFQICGLPRFGSAFMSVLFSLETDCLGLHEQGATDPNWKQSIEEYRTRYKYVADCSTYGYLPKAVVHDSVKVYVKKDAEASAKECTERFGYEVHLPSVQALREYADAWASLHGVMTIEENELFKVDTLRRVWVHCFQNERAFPEEKAARLVTMNIQRHEPEKVFSIENGNRLVKEVF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0108970_11293847

Overview

Ecosystem & Geography

Associated Families

Sequences