Scaffold Ga0108970_11275738

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_11275738
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10303
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011668	Metagenome / Metatranscriptome	288	Y
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1127573810	F011668	AGGA	MNAKQIALWMIALSFAFLGMALLTSCAGFNNPSLCVKTDYGTFCYELPEIPSLKK*
Ga0108970_1127573812	F034182	AGGCGG	MDSHAFHTLVGTSAPAAAVLISFSEVEAWLRILSLLMGICIGAVSLYKMTRPKR*
Ga0108970_112757387	F025459	AGGAGG	MKMTLEYDETERYEHEVACKSLDILILVDDIDQELRSALKHESGAFAKMDEDTMEAVRAWIWEERTKRNIPELV*
Ga0108970_112757388	F048162	N/A	LRKKKQPTVESERAEALAEAKRILSEHYDCGLTIVSWEQGGETMHGEFVFGNKYAVEGLASDSFSILFPDLEEEEEEDEA*