Scaffold Ga0108970_11160214

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_11160214
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1019
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F013755	Metagenome / Metatranscriptome	268	Y
F016253	Metagenome / Metatranscriptome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_111602142	F016253	GGAGG	MSDKIKSFIDGGTGVYSISKKEAGEIHKAAKKVKNYAVSYWTRNRKNKESK*
Ga0108970_111602144	F013755	AGGAG	VNDHIGDSNKMISDTPICDSTPHNVADLAMLCRRFERFAAGREAYIKQLETENDAMRADLLLWNEKEVK*
Ga0108970_111602145	F001259	AGGAGG	MKDSFAFVYVHAWNGMVRVESLDTAKHIDGNPEWKHVSTINPHVVLEQILRAKGKDRNQIIKHLLT*