Scaffold Ga0108970_11012730

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_11012730
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1159
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F015354	Metagenome / Metatranscriptome	255	Y
F035672	Metagenome / Metatranscriptome	171	Y
F068565	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_110127301	F015354	GGAG	MNPNLSSLIRHGLTAAGGFLVAKGLASADQIGELAGAVVPLIRLVLSMIQSKQATVPAPPPAA*
Ga0108970_110127302	F035672	N/A	MLTDSIRDLSIGVGGPAGGLLVANIVPDPLLAHISITLGSLAALSVIIKNVLDIWSNRNK
Ga0108970_110127304	F002843	N/A	MIVPVDIVAVQCNQNNSLFVTTGVDYDSSGTIVGSEITSQYTLNPGDDLTGQPVEVVNIANALWTPAVVAAYKLANPVPDNSVPVS*
Ga0108970_110127305	F068565	N/A	IFSLCEVLPSTVLQVRLADQIVDGEVVKASTFRRYCLAPGSDLAGQPEQVVAIAGAVWTPAAITAYNANLKPTIQ*