Scaffold Ga0108970_10934714

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10934714
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16170
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (27.27%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F002985	Metagenome / Metatranscriptome	515	Y
F008128	Metagenome / Metatranscriptome	338	Y
F020341	Metagenome	224	Y
F022401	Metagenome	214	Y
F056552	Metagenome	137	Y
F097198	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1093471410	F008128	N/A	MEPITVPKLVISLDVEIEVEYNSFSGKTADEIADALQDEIHDLVFELDHVIGMTSHCTSIAPFNS*
Ga0108970_1093471414	F001018	N/A	MTQLTQAKLKDLSVIKLYEHYAALEKSLPLLTPESQELAQAELEACAFLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPLDTNKITGRNYQFTLVKKKELTVEVSTDPEFWHTKERELYCIEETITTTKQVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVKQEYSVRSKRIFGKPELDLVPSEYPGELLPEDSSAD*
Ga0108970_1093471416	F002738	GGA	MSIDTYGLPSEQYVKFFKDNVRFAARLYLDTCNILSAEGAGNVDFKTVLDMYQEAVYQTNDDCRRYQKANNPEAIKDTDLLGIYPSREEMMEEIKLVSAKVEALTEYVTELVKVTTKGLEGIAGNLVD*
Ga0108970_1093471419	F002333	N/A	MSTQTQLELNAAQAAIYTRSNIRRAFQDFDDSEVAGIYLRDDDCLVVRRDGSEQTYNRELIKVAYTNYTHRLKDFFSYLGSNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDLGHLVAPDGLRFANRPIDLDSDMEADESAPIVGEPWCSCGSYQRQLSNVSDFASEIQGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPVDHISDGRFVLLYTNSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ*
Ga0108970_1093471421	F097198	N/A	MLQFEMGPEEAFWQEKMIRSINECNSISELKEMATLLTKIATMRQVAIKGLVKDALDLMSNQVDQDILTRLKD*
Ga0108970_1093471423	F056552	N/A	MTPTHDQFTLLYEDEHTKLLYEFKALVADDVINHLVDFLKGCGYMESTIYECMSESSAAYFDLLRTQQYVMKWDKPDPE*
Ga0108970_1093471427	F002985	N/A	MSYIIACWRWGTPHAITANKETNQFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNNEDLACKELSIQDESRFRK*
Ga0108970_1093471430	F020341	N/A	MKGFSTTKQRIHSSVYWVACYTKDNEDEPVGIHKKVLSYKPGQNKDALMTKYCHSIMKINQNVWEILVHQGPSEIPDSGDQIVIRLSREPFKGCSQLTNN*
Ga0108970_109347148	F022401	N/A	MLDADKPMEAIEDWQNWYRKHKVVAEINKPLVTKQSRENMHDTANAADSIESAQAKSMWIEKAKEHFADTLAEYQYELSGKDFYKAFYQAAVETMGHAEKEYKRAQELVDMLRYHHLGQD