Scaffold Ga0108970_10922973

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10922973
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70180
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (44.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049570	Metagenome	146	Y
F065740	Metagenome / Metatranscriptome	127	N
F087062	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1092297312	F087062	AGG	MNDPAFNLAMAAKVGDSWYQHLGAVEAAMAEEDRIAGARWRAGWTGDEGGWYAPCGMHESDWENEGYPLPEDPEFPAWAATHYATSTPT*
Ga0108970_1092297364	F049570	GGA	MAVTFPSIEPTSRSFNAPKWPTSGMTSQSGVTTRRLWGSRPSQAQLALTFENITDDNAALILAAYNSAKGSTINLVLPSIIFNGASSNLANWLNTSSNGAGMQWFFSEEPPSVESVAPGRSSVRVALVAELRLT*
Ga0108970_1092297367	F065740	AGG	MSTFAFVNYARFLLPNGTPTSPVYAYQNFSVNQPRIYGGVTYQFAPFGVSTGAGAKGGDRSEATLGAGTNAITVNVFAEAVNSRWLLELKTVSLDPDTFADAALIRTETWRVARYEMDTEKILLKLTSPLDAVRDQVPRRYLSTKLVGALPSSATLVVS*