Scaffold Ga0108970_10809207

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10809207
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35380
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (44.44%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F002876	Metagenome / Metatranscriptome	524	Y
F004130	Metagenome / Metatranscriptome	451	Y
F009805	Metagenome / Metatranscriptome	312	Y
F012964	Metagenome	275	Y
F020160	Metagenome	225	Y
F037205	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1080920712	F002876	N/A	MPCKKTELASAINSFGSARATGDSNLIAFSIELVKQLLDTLEFAPEDDAVVLEDTEVKEAEPV*
Ga0108970_1080920718	F012964	N/A	MDEQIPASQVPQAFQQTLEGQITPEQLAELKARAREAAIRQTLAQQNAIPPQQPQVIYVRRNLTVAEILLVILLSCGIVTGIQWSWSLITNVLPRIEVKVR*
Ga0108970_1080920719	F000973	N/A	MTYGIRKGFEDIAHELKGIKNILASMWHSRYANGETNVLNPEAYADEYISTEECGKRLGVSDQTIRNWISIGRKKPEKGWVEGIHYVNVSPDPNRKALIRIPWNHLVQSFAKNREIGFQDLRNHENVPMMSYQTRQFGRLE*
Ga0108970_108092072	F020160	GAG	MGYNPQAPMECRKRLAWTIACEQAVVTKEDAIQIYNRLMKEFETIDKRQKYKESESNKTQIT*
Ga0108970_1080920724	F037205	N/A	MANIYSPTYDPRQNSGTSGAEVSDLRPEQAYDTDLRRLDPEERGVIESTNANQDRIARFMKAARTAGAYQQRSGIAEPAIRGKTPRTRASIRGTELPTTGDSGGRSGAVGYARKPKPTFGKPFV*
Ga0108970_1080920725	F004130	N/A	MHSAAGFLDSFVQDEIACRCLDEEDFGAPLDNEENDVPLYDMYNRGLVACQQGLERNPLNLEGQRLGTTGYIPSMEQGLAMGASPRPKTLVLELEEPGEQEKLLSAKRRGLLR*
Ga0108970_108092073	F009805	N/A	MDITVGMGEWMNSLMSRMMNAADGDCFYLPTLMHLHAYTILKEHSFPEKNFKVTVQNQDVTP*