Scaffold Ga0108970

Basic Information
Taxon OID	3300008055 Open in IMG/M
Scaffold ID	Ga0108970_10695829 Open in IMG/M
Source Dataset Name	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9695
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (27.78%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9695

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (27.78%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Ecosystem

Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location Name	Netarts Bay, Oregon, USA
Coordinates	Lat. (^o)	45.394187	Long. (^o)	-123.939629	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Netarts Bay, Oregon, USA

Coordinates

Lat. (^o)

45.394187

Long. (^o)

-123.939629

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F031459	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1069582910	F010835	GGAG	MNAVALRTERALVDWLAAQDWSASPLGTPACLTSYGHGAFADSDLEDRMPDFPRIVVRASTAVPVHPLDRTCELDVSAVLQLSADDTSEPHLLAVVQVFENLMQYLYVDGNISELNADDTDPSGGFNAQFAVPTDFGINDTSERARTFTRSMTIFAAANAI*
Ga0108970_106958294	F031459	N/A	MQTDTNSSNGVGVSLATAAAAGAVSFIPQLTQWFQLGAAVLAFVAAAIGLYKAIKK*
Ga0108970_106958296	F017997	AGAAG	VNIIEQIVTAVLKWLTGLAKTPPTVEDAKPDKELKEKLLDRIDRAGG*
Ga0108970_106958298	F007260	N/A	VNLIATSLQLGMSVLQSAMGNPSFLWQGQLVRCLPAAITDANSVISGGFQDNVQVRLLVKLADWRLADSTLVTVDASVWSCDVGSNADRLLQENGSLILQENTDRLLLTFGKMIPVVGRLLTYDGRQLRIMSARRDGSGAYYVLDLGAKTK*
Ga0108970_106958299	F013879	GGAG	MTPTVVVDTTRFSAAWREYLPRTKRSLAEAINARTFYLLLRLYCLLPPKSPQAARNKILDYFNRPVGERRRDKKTGKLVGRSRELRVVHLIAQAKNKKAGKEGLYGEKMREAAASLRRRAAGSVGYLKSCVVKGIKKLSPSFTQFGGTRRVRKGSAGVRSIAANQALLNLANQYGLPTENVSVHRGSSAYAYNAKAGISPHSHVRMNIGLADNQIGKVNSIYAKAMQQAYDDEAKELEIHIRAKMEEAAEVLEKHGVTVT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0108970_10695829

Overview

Ecosystem & Geography

Associated Families

Sequences