Basic Information | |
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Taxon OID | 3300008055 Open in IMG/M |
Scaffold ID | Ga0108970_10514684 Open in IMG/M |
Source Dataset Name | Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11348 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (29.41%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass |
Source Dataset Sampling Location | ||||||||
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Location Name | Netarts Bay, Oregon, USA | |||||||
Coordinates | Lat. (o) | 45.394187 | Long. (o) | -123.939629 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013631 | Metagenome / Metatranscriptome | 269 | Y |
F037196 | Metagenome / Metatranscriptome | 168 | Y |
F053990 | Metagenome / Metatranscriptome | 140 | Y |
F073458 | Metagenome / Metatranscriptome | 120 | Y |
F081258 | Metagenome / Metatranscriptome | 114 | Y |
F085684 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0108970_1051468410 | F013631 | N/A | MSTDPPDALQYRDTSKGDHLADLDTIFNYTTSRWDWHEGNVNQMWIQEIEESPDFYRYIAVAYNPRKNVSTVVSEPRCYADTLKWVRMYCGNFCILPEYCY* |
Ga0108970_1051468421 | F073458 | N/A | MSAKLIALASEIVDTNPAAAQLIVSLTKAETGAELIEALDNYDSTVLENYSEPVDSEDEDEGEVTLTDADGIVTSV* |
Ga0108970_1051468422 | F053990 | N/A | MYSSSQGGFKMIDTCVLHDDYEDFAKKFLGVDYEDFIGLQLGLPDEDEIEIEYSLSI* |
Ga0108970_1051468427 | F085684 | GAGG | MVSNTVYAYSEVERAYKILKELAERENKLHMMDMTINLQHLDVIQYEILPALEEIVYFDPTP* |
Ga0108970_105146848 | F081258 | N/A | MSFTFPRLSAGIYEVQKDSNTVGFIRKASAAKWIIVDVVDTPQQVTKTLKEAKDACVNLIIFDVVDKTPEPEYNDSVGVDKVNTELNKVLEGSLHCYKQIPGTDEFKEVSPVEFGFAEPTLEPILF* |
Ga0108970_105146849 | F037196 | N/A | MSFTTITLEKFHELLADAYAVCVNDTLYFVGYDTDDNPYISDNDGDDYVDLSTVDGDIEVHKNYVFFYVNGEAMQMVFLNIKKLS* |
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