Scaffold Ga0108970_10514684

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10514684
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11348
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (29.41%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F037196	Metagenome / Metatranscriptome	168	Y
F053990	Metagenome / Metatranscriptome	140	Y
F073458	Metagenome / Metatranscriptome	120	Y
F081258	Metagenome / Metatranscriptome	114	Y
F085684	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1051468410	F013631	N/A	MSTDPPDALQYRDTSKGDHLADLDTIFNYTTSRWDWHEGNVNQMWIQEIEESPDFYRYIAVAYNPRKNVSTVVSEPRCYADTLKWVRMYCGNFCILPEYCY*
Ga0108970_1051468421	F073458	N/A	MSAKLIALASEIVDTNPAAAQLIVSLTKAETGAELIEALDNYDSTVLENYSEPVDSEDEDEGEVTLTDADGIVTSV*
Ga0108970_1051468422	F053990	N/A	MYSSSQGGFKMIDTCVLHDDYEDFAKKFLGVDYEDFIGLQLGLPDEDEIEIEYSLSI*
Ga0108970_1051468427	F085684	GAGG	MVSNTVYAYSEVERAYKILKELAERENKLHMMDMTINLQHLDVIQYEILPALEEIVYFDPTP*
Ga0108970_105146848	F081258	N/A	MSFTFPRLSAGIYEVQKDSNTVGFIRKASAAKWIIVDVVDTPQQVTKTLKEAKDACVNLIIFDVVDKTPEPEYNDSVGVDKVNTELNKVLEGSLHCYKQIPGTDEFKEVSPVEFGFAEPTLEPILF*
Ga0108970_105146849	F037196	N/A	MSFTTITLEKFHELLADAYAVCVNDTLYFVGYDTDDNPYISDNDGDDYVDLSTVDGDIEVHKNYVFFYVNGEAMQMVFLNIKKLS*