Scaffold Ga0108970_10395296

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10395296
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2271
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F042896	Metagenome / Metatranscriptome	157	Y
F073464	Metagenome / Metatranscriptome	120	N
F092055	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_103952961	F005089	N/A	MNINDLFQSKKLSETLALENYQQRNGVIDYRLDGVCNHYFSKYDLQGNRDGEVCLTCKVSKTVKGQMRYTWQIDGKRIAEKQIPAEFN
Ga0108970_1039529610	F092055	N/A	MNTTQMDQIFHYHTDWKEGKVNQMWIQQLGDADCGNLYVAISYNPHKDVSMVMSKPRTSYHETLQWVRKFCGSFSILP*
Ga0108970_103952964	F042896	N/A	MTSTVLVKFSYEDRVSEEVPIQVKLDLSKNSNRKKLLNRLLKSNPNITEVSLIK*
Ga0108970_103952969	F073464	N/A	MNTKNWVIKIEIAIDENSHPRKFVPNAIAECLNFGDGEDIIDYEFICLD*