NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0108970_10316723

Scaffold Ga0108970_10316723


Overview

Basic Information
Taxon OID3300008055 Open in IMG/M
Scaffold IDGa0108970_10316723 Open in IMG/M
Source Dataset NameMetatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11857
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location NameNetarts Bay, Oregon, USA
CoordinatesLat. (o)45.394187Long. (o)-123.939629Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009887Metagenome311Y
F024787Metagenome204N
F026555Metagenome197N
F027846Metagenome / Metatranscriptome193N
F033425Metagenome / Metatranscriptome177Y
F036148Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0108970_1031672310F009887AGGMGDMEMIDKYGIKATFTDNGVELDIVPLSQCCEWCNDPRMLNINGVRKCAGCGCVNHIEYKNHG*
Ga0108970_1031672312F024787AGGAMNYEIYGWLVTITLFTLVALLIGVTWIVAVENGYDKGFKSGYKRGTADTKQTNVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVNLWDKENR*
Ga0108970_1031672313F027846AGGLELVKYDKQSGAYVDEKGKHFVKASLIRKHAKKAIGARQVRGRLSAKMVEAYWLDKFKEAVKYEL*
Ga0108970_1031672320F036148N/AMATKKTNKTVRRRRRAPRKAEQLNKLETHYVTLNEMYRAAKAAGFTNEVAYWLITEPGVSIPDWITDNKPNEIVPRIDPTDDEDED*
Ga0108970_103167236F033425GAGGMAIVSSQVTVTTTSQSIVSVDNVSRDVLLHAKHDLVIGNSAVTSSNGYLLDNGDQVRLTLMDGEDLWAVCAAGSGTLHILVSKVD*
Ga0108970_103167239F026555GAGMAKFDYHKAMREGHGYNLYIADLLQTFGVPKVDVPEFSIATTHDQIRDKTLNEKDVIVDGLVLEVKSSSRSFTNADDFPFNPVMIDTVSGFDSKIIKPFAYVMISQITQGIFVIPTATKYDWTIRTYFDADREIEERFYMTKKRHCRPFIEMVDLLLERANERTNQM*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.