Scaffold Ga0108970_10315707

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10315707
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2774
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047649	Metagenome / Metatranscriptome	149	N
F055721	Metagenome / Metatranscriptome	138	Y
F067687	Metagenome / Metatranscriptome	125	N
F077968	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1031570710	F067687	GGAG	MTKLSTQTQAIIDAADEVFSHGGTIREGFAAALRVLADNVAPDDYKCFYGDREYDAGMEGRNDEIREAILDIATELEAN*
Ga0108970_103157072	F077968	GAGG	MTDTWKKWTIWTSIHLFEYCVYSWRSHMWNHLEGFPDEDRMRELFWHYLNFGNTTTYYEWDT*
Ga0108970_103157076	F047649	GGA	MRYYETRTYEHQCDFDAKNKAEKASQDYYKKWINLRKEVRELVRTQNISITPEFAKLIGLK*
Ga0108970_103157077	F055721	GGA	MNKEEYYKWIEENDTYPEHSHQWIVRTYTGGELFYRNFGTFETKKEAKEFIVNYKKKYTTKGFITRYSIQALCGLVRDT*