Scaffold Ga0108970_10212136

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10212136
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5036
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008080	Metagenome / Metatranscriptome	339	Y
F038674	Metagenome / Metatranscriptome	165	Y
F060851	Metagenome / Metatranscriptome	132	N
F065779	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_102121363	F060851	N/A	MKAILEFNLPEDQRKFEMANQAPDMLAAIGHFEDRLRSYIKYGHEFKSANEALEAIRALLHEEINLRRINIHD*
Ga0108970_102121365	F065779	GGA	MSSASITVSVNLKIKEQEITLTMEEVNDLYSQLRAILGYNNQPYTIWGTPSPYINYTLNCSDNTNSNWKTT*
Ga0108970_102121366	F008080	N/A	MRGTMEYSRDTIPGPTEDQTQEQFEEAFKESDECYCGGDVYETCPYFDNHKRDSVDVYLGGDDNINNDEKPVFVTSNWEDFEFERGGGSNYVPEAPDKVGEVNIWWSNDMKFNYVYFWNDFTEFDPSKLKIQYGVDQNGNNYLEDLIYDGECPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQDY*
Ga0108970_102121367	F038674	N/A	MGRKCFFKTLFGGFVAASTVPSLVKAEDNPQPSKDLSLGREVLRIDSSGNVGIGGSSNIGLGTSTPRTKLHVEGIIFHVNDRMLEMAGDENGDFKIRWLNPKENETVHNIVMQKPKDDPWKREFVTIR*