Scaffold Ga0108970

Basic Information
Taxon OID	3300008055 Open in IMG/M
Scaffold ID	Ga0108970_10109647 Open in IMG/M
Source Dataset Name	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8399
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (28.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8399

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (28.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Ecosystem

Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location
Location Name	Netarts Bay, Oregon, USA
Coordinates	Lat. (^o)	45.394187	Long. (^o)	-123.939629	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Netarts Bay, Oregon, USA

Coordinates

Lat. (^o)

45.394187

Long. (^o)

-123.939629

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F007026	Metagenome	359	Y
F021097	Metagenome	220	Y
F035274	Metagenome	172	Y
F091979	Metagenome	107	N
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1010964712	F091979	GAG	MLIAGRFAVGGSPFLEGWKQEYMKAQGSMPPPEKVMDFLTSVIRNESIPMQNKQAEIRMLEQMQRFRPEVRSVTG*
Ga0108970_1010964714	F007026	N/A	MEQTQKYPSIDWTKNEYHQLQLVVDALKAICAREDKRHQMDEHLDPHMRNIIDEVIGMLEDEIDYDPTPNEPGEPPITANEMHTAAWKEHLAMHS*
Ga0108970_1010964715	F001165	N/A	MTNPNTPRIPDAIDIQRLEAMQLVAKMKESAEKHGIGFIGGFIAPNGEKFVMTNLDDDDAMALMPEDLK*
Ga0108970_1010964719	F001807	GGAGG	MTVLAIEDTYFTQTHVTVTAVVDEMRLLYRATRFEPEEWAPALCQATIELDPEESIPLDEDGFCAYLDHLDPQWQLLDLTDEQ*
Ga0108970_101096472	F021097	N/A	MSDFTQACVSLVLGIGSGLLLSVGAQKMFNSHYRETCNSRPNHNLIYTQSALGDTYYCIHSKYL*
Ga0108970_1010964720	F103180	N/A	MIGFSLEFKRYYFVLRGPKGRVYLATGFAKRMPVMTPTGTYTLDQCIGTWPGDETDEELLDTLRSIR*
Ga0108970_101096474	F035274	N/A	MALIVGKEDLDNALAVFKIDHYHLTFDDNVVYLHWVSTTSQAREYIDAFLECLDVLIDERWVDTYGSHEQGNSVQLPDEDYICCRYILETV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0108970_10109647

Overview

Ecosystem & Geography

Associated Families

Sequences