Scaffold Ga0108970_10105602

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10105602
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20365
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040592	Metagenome / Metatranscriptome	161	N
F060847	Metagenome / Metatranscriptome	132	Y
F073460	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_101056021	F073460	GGAGG	MLQSINVIANALICLGGLAFYVMLFTKIGDGVKQIDQFGKVSYHVVRTGLAFIVAGALFNVLLLTVPPASEVLMNLGFGLVLSWAAVWHGKKFGVITGVKAIDRKTGTYRVQK*
Ga0108970_1010560214	F060847	AGGAG	VTVLLNAAGQPEPPTHVVARLRALHAGLFMKFLEQTGEHWAICLRWSPEDTRWEWVQRGETDPEMAYDIIGYLPMLCSIDEAPAYLERTFRQYPKDEVRRMADFVEQFNATQPIGQAVDAALTEVLDTL*
Ga0108970_101056022	F040592	AGGAG	MSNEKSSVMLVVAGFFGSLIAVGKASHGNMRDNLLAISAGTSSAYFLTPVVFEITGIAASSQTMSAMAFLLGVLGQRGVEIVIGKIFPEAKDAPVD*