Scaffold Ga0108970_10099031

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10099031
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21741
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (33.80%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F031454	Metagenome / Metatranscriptome	182	Y
F037191	Metagenome / Metatranscriptome	168	Y
F048940	Metagenome / Metatranscriptome	147	Y
F053990	Metagenome / Metatranscriptome	140	Y
F058096	Metagenome / Metatranscriptome	135	Y
F061794	Metagenome / Metatranscriptome	131	Y
F081258	Metagenome / Metatranscriptome	114	Y
F091925	Metagenome / Metatranscriptome	107	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1009903123	F053990	N/A	MMYSSSQGGFKMIDTCILHDDYEDFAKKFLGVDYEDYISLQMGLPDEDEIEIEYPVGI*
Ga0108970_1009903125	F093764	N/A	MARRCNSASRQMVENLQSQLVDYFQENILEDCDYEDLTGSDLLDALVGTFRELESEIQKKLNPLQFVLNKLDPKDSDSQVLNG*
Ga0108970_1009903135	F013631	AGGAG	MILDVFHYTTSRWDWHDGNVNQMWIQEIEESPDCYRYVAVAYNPRKDSSMVMSEPRCYADTLDWVRKWCNSFCILPEYC*
Ga0108970_1009903136	F081258	N/A	MTITFPRLSAGIYEVQKDSNTVGFIRKATASKWIVADVVDTPQHVSKTLKDAKDACINLIIFDSVDSNPSDDYNDSVEVDKINSALNKTLEGSLHCYKQVPGTDKFEEVCPSEFGFAEPTLEPIEF*
Ga0108970_1009903137	F031454	AGG	MHESTLDLFCNDNSDEFADEYAMEIERKAAELEVTVDYYLAEFI*
Ga0108970_1009903141	F061794	N/A	MPFSKKFPKSGETKHIRVPVVYADLVLELMELFERRFDVDKGRNLLKKYISNLS*
Ga0108970_1009903144	F027828	N/A	MLTGFKSVKMTELTTETMLDTVLTIEEILTEKQLTALRDIMYFYKEFELELYNYPPEDTLFTKTQRELFDIFDIK*
Ga0108970_1009903146	F091925	N/A	MTSISFTSGELLDIISALEEKENLAYLVDYDPGLAAYYMNLGNQFQKVYDKLQDFVPENRVANLVLAVN*
Ga0108970_1009903161	F037191	N/A	MTVAEWIEKLKQFPQDQEVKITDGHNYQFYEGDFDFQLFEDVDGSTFVDIGIGGFDEEDND*
Ga0108970_1009903164	F058096	GAG	MNAQLSIDECKVMWVVGALERLATLGLIGPDIPLQLTGSALDDYLQIDEHRELLFESDFEIASIFTAIVNDESKNTDPDEIKPLIELLLEYKNNRTEIVKYALSHQSI*
Ga0108970_1009903166	F015080	N/A	MFDQLEFQAHPIPGAIQARYKFSNDWSISVVSGLPGSGLYGNVTDNTYEVAIFRPNGNMTEDVIGWNTKAEVSAMMRVLVQL*
Ga0108970_1009903169	F048940	N/A	MEKQFFINFISLINEVQGKSKLPSQIQSNRKSAWCKKVSNPRQKKDALTRV*