Scaffold Ga0108970_10080323

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10080323
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10059
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F025487	Metagenome	201	Y
F030408	Metagenome	185	Y
F035274	Metagenome	172	Y
F059883	Metagenome	133	N
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1008032312	F019817	N/A	MTSTLTPPIGLTINQRNIYMYFLNHRKKYKNTPCYVPRCPGQNSRVEQWINALIKLEQYGLVRIDRSSVNYTGWIMFEPSD*
Ga0108970_1008032313	F091979	N/A	MLIAGRFAIGNSPFLQGWQQEYMKAHGSMPSQDKVMDFLTSVVRNESIPMQNKQAELRLLDQMQRFAPDIRNAVR*
Ga0108970_1008032314	F007026	N/A	MEQAKKYPECDWTKNEYHQLQLALDALKNIRNRECRRHMMDEHLDPHTRDVLDEVISMLSDELDYDPTPNEPGEPPITAAEMHAAAWKEHQAMHS*
Ga0108970_1008032317	F001120	N/A	MTKKSLISFDRTIHGVNITEHGIKSVTKQIKLGPFQLTVNANPNGIKGSVSIPGTGLSIPNLKII*
Ga0108970_1008032326	F025487	GGGGG	MTHDSVDLDLADQTIALIPEQAWTQVRQVIVTALVDNMPGFVVERLTGSYDNFDRAEEILYDYYQLPKLQHELIVDAFKIMGAVNCIELLHSLNLPQDDLPAMQQ*
Ga0108970_100803233	F015587	N/A	MTKLNIRKNTAQLLKITASAVENAKVPTKAGMVEKLNEYRTRAAALIMPNDMAFVIQSKQGN*
Ga0108970_100803234	F003687	N/A	MNYQAVEQLLTQDARLLARRDSPTIDTELEQQRQAALELFFQWQDGLAQFQDLVPFCAVLQRKVDLNRDLLRWERRHED*
Ga0108970_100803235	F035274	N/A	MITFDQTELNNAIELFQIDDYYISCKSTVCHLHWVARTEQAREYIDAFLECLDVLIDGEWVDTYGSHEQGNSVSLPDQDYIACRYILATI*
Ga0108970_100803236	F030408	N/A	MGLHIALIADRTGRYAHVWGSAPTWSQFHDQLEDAGCEVIEDQSIEWEDCTRDEIAEDCMSVHQLLTDSDFVAH*
Ga0108970_100803239	F059883	N/A	MTEDNKRYHLIINVDEKYAIVNALAFYHAHHIQGALMDEDEREQYMLAFQEDGPTFVDSLATKVANTF*