Scaffold Ga0108970_10068105

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10068105
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6043
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007579	Metagenome	348	Y
F054621	Metagenome	139	N
F067738	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_100681052	F054621	N/A	VAQLPLQIQGIQETLKLLNDIDPKYRRLVTKQIKNAGASILNEARQMVASYPNSKGNGAPLSGMVRGNLVKGRETTWRTDAVQKGFKIKVGVRGSKERYVNFDRGGYTEQVVFGAKPYRLMTVQSADAAGVIYDHAGRNTNSQFVTNLTVEEGNQPRVIDVAVEKNRPTVTADVLKVVEQVMAVTNRKMKVR*
Ga0108970_100681056	F007579	AGGTGG	MPTPTKQQIDTQIGNATRELAPGTTWKYNEPGDGYYCLEWLDDPALQPTEAATMLKATELAANPPTVA*
Ga0108970_100681057	F067738	N/A	MQALWVALVAGGFTVLVAIINRADKTSQKDHAETYKALGRIEQKIDGHVTNHEKL*