Scaffold Ga0108970_10033347

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10033347
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1078
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003265	Metagenome / Metatranscriptome	496	Y
F034828	Metagenome / Metatranscriptome	173	Y
F050321	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_100333471	F034828	GAG	MVTAKKVPAKTAAKAPAKTPAKVAPVKRRISKPKTEAAPKPQPAKTPADTLGKIIGLIEWVDSPFKLLTVILLSFMAFAGYFAWDSRQVILQAIQNQDHMPQLVKQDDLVEPAKSLLKDVDGLVVLVHKANLATNSR
Ga0108970_100333472	F050321	GAGG	MITLNKWYPMVQPTHTARQLAFDKAVEKVQEEYRYAMECLKQVRKTEDLELELYDKRARQHTIELGSFEDRRRFQIFV*
Ga0108970_100333473	F003265	AGG	MRVLLFLLLLLLSRATAKESCLVSDFYGLSWLGNPSERHQRLSEWLITNGDACRSEQLVGIWNNLALWAGTADSADLRGKVLFYYARAIEREKK*