Scaffold Ga0108970_10033170

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10033170
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19254
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F011391	Metagenome / Metatranscriptome	291	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1003317010	F011391	N/A	MAKYQVVEGFTVLDKQYPATIDDADIDHLDSLLQSGRIVPVADKSTSKATTAGDK*
Ga0108970_1003317023	F021759	AGAAGG	MDAGYATVLAAAVATLGGIIIALMQLKGFRDENRADHAVVQKRLDNLIDMVGKQGARLTSHLDWHVTKEPSGSLTKTKQVATRKKK*
Ga0108970_1003317024	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTDPAEVESVGFLLATGDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKNIKVLMDVQIKI*
Ga0108970_1003317025	F005528	AGGA	MRILTAILATFTSLTISLGIAQAVSAPAHSSVAVIALQPLWQADRLDPIQPIRYRHGDTSWLPTLAQQAGWPDHAIPKLQQIVLRESGGCPNRKGGDIVDKDCNITGVSEWNHRSDTGLLQINGVNYDPSRNKWAAICRELNICTQDPLLDPLTNLKAGLVLYRLSGFDPWNPCNWRVCKASTTSVP*