Scaffold Ga0108970_10023826

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10023826
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10198
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (30.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F028148	Metagenome	192	Y
F086598	Metagenome / Metatranscriptome	110	N
F086618	Metagenome	110	N
F102590	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1002382610	F002227	N/A	MKLTIQSKTNAQTIVDLFNAIITGECETQGVKPLSIYDEDKHICSITDADGNQILELIIERERGDKLMQIGEPETLQ*
Ga0108970_1002382612	F001964	GGAGG	MSRNLFAPPIFKVQINGAIGWSDLKQRVVSFRTIEYATRKEAESAAKELNPGEYTQGRIRVVPVEMPEDYDVYPVTERVSEKPKSAG*
Ga0108970_1002382614	F086598	N/A	METEKSSVLKDQLEKTATMFKRISESVDRIEKTLKEHERKIDEALKRSSYQDDDDDTWEGFGPKPERQPINPNAEKYTLELRTGPYTIHRDDGESDASWQRRKDHLMDQRVTFLNGSGQNGTPEQVAYLQRIEARLGRKIFQYPLATT*
Ga0108970_1002382618	F003748	N/A	MFKVNRKDAGGSYINAEGEYTVTVMKVEETLDAKGREVCKVTFATEDGSSIADRFINQENVWFRVNQLVAATNHNVPDGTEVDFLGKKGSYANFLKSMIGLELTIVVRAEEYDLNGEKKKAYRIKAMKPAVSTAPEEKPF*
Ga0108970_100238262	F000922	N/A	MGNCWGKRGKTKRGKGVATGNATADPDSMTKAQWERAKAEYLTGKGWKAIADDLSVPMDTLRSRACREGLTKVKAQMQTVCIEKKTQSLESLSALVRSKLAADAASTLERIDSYALDGIKDEATRETILGSVAKRSALVFGWSEAGEQASVSINLLGSMPDRSIEVSVTNESETK*
Ga0108970_100238266	F086618	N/A	MKSIQRIETAVGNLINGNLTHARKSARGLTYSDIFDWLTGPVGWPESRSRACANYLIGRIDYRTYCNADR*
Ga0108970_100238267	F028148	N/A	MKTIHEIIQEIQFFDPAIRAFDAHDLPQSVRAYLHHNYRMDARLTDEEQQLIEVSFEPFADNIREVFQDDPRPDATRFYLFDDLSLYIRTNAGPELWADAQVFVVERILPAMRLTRLEADLMREIGMDEQVSEVRDDFYSSFAHVLHRDCGIPHCDAREHWNAWSNQLSDSACESIVLGGGESGRVEGLRFASEYAVKA*
Ga0108970_100238268	F102590	N/A	MKPQFTPGPWRTTGLNVRADDALVCYATNHWANYETPESERQANANLIASAPDLLAALERLTHPMADDEDLAYAREVIRKARGLAVKSHE*