Scaffold Ga0102893_1206838

Overview

Basic Information

• Taxon OID: 3300008052
• Scaffold ID: Ga0102893_1206838
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1553A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 567
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.1867
  • Long. (^o): -123.8835

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F013891	Metagenome / Metatranscriptome	267	Y
F073544	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102893_12068381	F000671	GAGG	MEKILCYSCNKSKNKLSVRKSILIPINLLMCETCITAKFEPRWIIILSGRQLGPEAVKEFIVKKRYIGTDI
Ga0102893_12068382	F073544	GGAGG	VREYYEVIKVVSIHAERVYGSVESLGIYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHIEESN*
Ga0102893_12068383	F013891	N/A	IVKYPEFLAIRLYEDNFLQYEGIKKEIVIDYVGKVKKLIESYGVRCELEGVPSARILRSN