NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098062_1037130

Scaffold Ga0098062_1037130


Overview

Basic Information
Taxon OID3300008051 Open in IMG/M
Scaffold IDGa0098062_1037130 Open in IMG/M
Source Dataset NameMarine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)750
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000782Metagenome894Y
F020711Metagenome / Metatranscriptome222N

Sequences

Protein IDFamilyRBSSequence
Ga0098062_10371302F020711AGGAMPNLPKIITSNGTDITPIMEEMISYLKEEKELGNLDKIADVKVPLTSSADWKLICGVLCNSIVEWASQNRNQGGLDLIKHMQGDIGYLVKRLGLVE*
Ga0098062_10371303F000782N/AFSVRWLKNDGTEGYIHRGFLGLNKKVEGEPNEHNNYVLVYKMGNGYGTQRRFANVNPNTITHINSVEV*

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