Scaffold Ga0098062_1031532

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098062_1031532

Scaffold Ga0098062_1031532

Overview

Basic Information
Taxon OID	3300008051 Open in IMG/M
Scaffold ID	Ga0098062_1031532 Open in IMG/M
Source Dataset Name	Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	844
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Caribbean Sea: Cariaco Basin
Coordinates	Lat. (^o)	10.847	Long. (^o)	-65.114	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080504	Metagenome	115	N
F089029	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098062_10315321	F080504	AGG	MKETLIKTAIDVESARSSQAKTNLLALCENGMAIPEHSDLVQEILKQTAIKAEADENVRVLEELLRSQ*
Ga0098062_10315322	F089029	GGAG	MNREQLEKYVKSFGATERLARKELNERYKMLKPLGFSDDKIFNILVQGSPLDFRTLQAFHHRTKKVSARSRKRIFKLLAS*

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