Scaffold Ga0098052_1195183

Overview

Basic Information

• Taxon OID: 3300008050
• Scaffold ID: Ga0098052_1195183
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 788
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002697	Metagenome / Metatranscriptome	536	Y
F006422	Metagenome / Metatranscriptome	373	Y
F027901	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098052_11951832	F002697	N/A	MKSRNKFATCRGVDEHEYYDEWSGQFKTFKSKQWTDLKGFPCYNFWDIDAEHPRTAVNYSVRKA*
Ga0098052_11951833	F006422	AGG	MKLLIGLSGFVITMIGVILSIHLDFTIGLLVTFFGVFMFWSMLPSTDSNERLRRYERQHQEWLRK*
Ga0098052_11951834	F027901	GAG	MTDKVDCAIWIWDNELQRKKRIRLQTLLNRVNHTLRNENQTYFALEHD