Scaffold Ga0098052_1077785

Overview

Basic Information

• Taxon OID: 3300008050
• Scaffold ID: Ga0098052_1077785
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1379
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008649	Metagenome / Metatranscriptome	330	Y
F016323	Metagenome	248	Y
F023958	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098052_10777854	F016323	AGG	MASSKKLIDIIDEMNLKEDKTNTMVVGKLNRLASLIFERDKYSDDVQFVSTIMEDLIQSPHHRITKLEIERCNNLYKQYKEIK*
Ga0098052_10777855	F023958	AGGAG	MLQLAQLTDIIGAYEKIKVAKSAGLDLWEGLILILFILKDIAIVGGILGTIIWYVKGRDGK*
Ga0098052_10777856	F008649	N/A	DVTNTLNHNGFDEVKAVPNNTQFSIRVGYWDRISASLIETMEQYHSVRITETDWEDEDCGTLYRYLVEVVDEDCGYTLDELNELDSYTEEAMYLESVGIGEDDVWGVA*