Scaffold Ga0098052_1034133

Overview

Basic Information

• Taxon OID: 3300008050
• Scaffold ID: Ga0098052_1034133
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2290
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F024797	Metagenome / Metatranscriptome	204	Y
F040126	Metagenome / Metatranscriptome	162	N
F049672	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098052_10341332	F049672	N/A	MIPKFDNYLNEASDYEFNPNEAAARLKAREKENIQRYRAAQDRGDNYAIALYELKIKMDKIDLEGLKVQTEIHKLKQKFGK*
Ga0098052_10341333	F040126	N/A	MKKVPLFEDFIPVGFGADNAAQFSLGGINNVETGYNMDAIVGPVQTLGNHVAEQANSYESNDNAEHTGEAYIKEAKKHINDKIDEACETYSAMGESILNEGTDISSWNQAGIKGDANAQITTFVGPKDIEDFGLGRKCMQINIGRNYVVLNPADIVEMKELFKNYKV*
Ga0098052_10341334	F024797	N/A	MSEFLRTGMGRKLLEKDIPKLTSVLERIANQMEIANKLDEKKFVLEEKIHRLTIKEANQNGQ*
Ga0098052_10341335	F008425	AGGAGG	MGNKDITYDEFKAHMDKGNKVYMRKPKSWQKIWFWWESKKEKWFLNKAVEKRESGKVIIQGSVWITAKQMKDHMDFMFRQGYKYYIDE*