Scaffold Ga0098052_1011048

Overview

Basic Information

• Taxon OID: 3300008050
• Scaffold ID: Ga0098052_1011048
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4648
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001136	Metagenome / Metatranscriptome	767	Y
F019329	Metagenome	230	Y
F064626	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098052_101104811	F001136	N/A	LWIRKWYNTVNSLRIRNGVYMVVDDTIAQALNRIADGIEENNTLLNRIANHYDGVVPVMTRNAKRAESQAEELERGFGQQIKDIFRPQEH*
Ga0098052_10110485	F064626	AGGAG	MKELERARKEIKAVLIEAEKNNEAFHWLVDKLGMIRMYAQGLPIHMVLGIIDEWMEDVEERKRVKSLEGFDERHIQKAYTSTQTKWDSRNN*
Ga0098052_10110488	F019329	AGGA	MAEIGQFIFCNVASIVIYLLKCFFYFRTGIKSGATVTQLLIKLYKSMSYYVAPMCHYSRQRKALFCFLENKKSKNITIPGSYTW*