Scaffold Ga0098052_1010611

Overview

Basic Information

• Taxon OID: 3300008050
• Scaffold ID: Ga0098052_1010611
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4761
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F057678	Metagenome / Metatranscriptome	136	N
F061281	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098052_10106112	F005364	N/A	MKKLDLKNKLKTIVKEEVSSLLAERDYKYGGLLDPTDFDPVDPEVHIIGFGSMTRSALRQEIVRRLQGALKTAKDAATGGSNSYDKFKSLEGVLEPNGVLQQQLKAEREISQQMEELRSQGGRRAIPIPKQK*
Ga0098052_10106116	F057678	N/A	MVEYEVNDKVVFRFNDVNEVAVITNVRQHKKTITGYDIRSEKGSGYVLVQVDANLTTRQRNKRVEYPLINSKLTAAWIGSDSETNLFAKENVGHTRQNFTKDMILVLDGEAGGGVQHLERHNDLIFPTQGPRSF*
Ga0098052_10106117	F061281	N/A	MNKFKKRVLKQFPNAYVESSVNGLRIINNDEYLAKEFYMPDTIYEDKAWEYASMACRLTQNFNRAHPLRMDLSDVENKLARINRRKRNGRRVK*