Scaffold Ga0098052_1000775

Overview

Basic Information

• Taxon OID: 3300008050
• Scaffold ID: Ga0098052_1000775
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20087
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F029449	Metagenome / Metatranscriptome	188	N
F095562	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098052_100077510	F029449	AGAAG	VAGRVPIIPGVPTPSDPQCSLTYCGRIIAQVDCIKYIMQGTTACIDIQLFGSNDLPLNLDNICDIQIQLTNELECVVANFWWPSIPSGSKGYLIDILQFTDTSGVIHNEGLIRICLSAACTKATGPGNISAEILLTECASGNTGDPTGVGPTGEFPTGYQEVYGIPCLWVATILESKIAKNGGDSGCGDGGGFVTGVI*
Ga0098052_10007756	F095562	AGGA	MEQTDDSNILRSQVDQIETEVNKLEKAKEEIQNECNHKGNTFVQFDKSNSMKKYCSNCKRELGYPSIAEQDKFLGKK*
Ga0098052_10007759	F002033	N/A	MSKFNKFFADHGIKIVLALMLLTYFKSCSIDSEVERIKKEQRILTTEIDTLSTQIVNEEEMIYLIKTVPAWKTLRIEEISDKERISINALEEKED*